Presentations
| 2006 | 2007 | 2008 | 2009 | 2010 | 2011 |
Baptista, A. M; Spitz, Y. H; Needoba, J. A; Peterson, T. D; Zuber, P.; Herfort, L. M; Seaton, C. M; Cho, K. H; Welle, P.; Lopez, J. E (2011) Collaboratory – Enabled Ecological Forecasts. ASLO Aquatic Sciences Meeting, February 14, 2011, San Juan, Puerto Rico.
Baptista, A.; Lothrop, R.; Schumacker, E.; Roger, P.; Hudson, C.; Heinith, B.; Green, V.; Wegner, K.; Peterson, T. (2011) Bringing Together Tribal And Quantitative Oceanographic Perspectives In A Scientific Framework For Coastal Margins. 2011 ASLO Aquatic Sciences Meeting, February 13-28, 2011, San Juan, Puerto Rico
Baptista, A. (2011) The NSF Science Technology Center for Coastal Margin Observation & Prediction: A National and Pacific Northwest Asset. Marine Technology Society - Puget Sound Section Annual Meeting, April 21, 2011, Beaverton, Oregon
Baptista, A. (2011) Coastal margin 'Collaboratories’: a scientific foundation for decision-making towards sustainability. 2011 International Conference on Water, Energy and Environment (ICWEE), November 15, 2011, Sharjah, United Arab Emirates
Barnard, A. H., Koch, C., Egli, P., Hanson, A., Gregory, T., Ragan, M. A., Jones, B., Campbell, R., Needoba, J. (2011) Performance Validation Of The Cycle-Po4, An Instrument For In-Situ And Long-Term Orthophosphate Monitoring. 2011 ASLO Aquatic Sciences Meeting, February 13-28, 2011, San Juan, Puerto Rico
Durkin, C.A., Bender, S.J., Armbrust, E.V. (2011) Excessive silicic acid supply leads to increased silicification in coastal diatoms. Eastern Pacific Ocean Conference, October 11-14, 2001, Tahoe, California
Fortunato, C. S., Herfort, L., Zuber, P., Baptista, A. M., Crump, B. C. (2011) Spatial And Temporal Variability Of Bacterioplankton Communities Across A River To Ocean Gradient Assessed With Tag Pyrosequencing. 2011 ASLO Aquatic Sciences Meeting, February 13-28, 2011, San Juan, Puerto Rico
Gilbert, M. L., Needoba, J. A., Koch, C.; Barnard, A., Baptista, A. (2011) High Resolution In Situ Study Of Nutrient Loading And Estuarine Response In The Columbia River. 2011 ASLO Aquatic Sciences Meeting, February 13-28, 2011, San Juan, Puerto Rico
Koch, C. R.; Needoba, J.; Slasor, L.; Barnard, A.; Pegau, S.; Coble, P. (2011) In-Situ Tracking Of Oil From The Deepwater Horizon Oil Spill Using Spectral Fluorescence. 2011 ASLO Aquatic Sciences Meeting, February 13-28, 2011, San Juan, Puerto Rico
Lauffenburger, N.E., T.B. Sanford (2011). Remote Sensing of Salinity
Intrusions in a Marine Estuary. Earth and Ocean Sciences, Geophysical Inversion Facility, April 29, 2011, U. British Columbia
McDonald, R., T.D. Peterson, S. Rowe (2011). Development of a professional learning community for promoting inquiry and field experiences. Math and Science Partnership conference, Baltimore, M.D.
Megler, V. M., Maier, D. (2011) Data Near Hear: Ranked Geospatial-Temporal Search for Scientific Data. 19th Annual GIS in Action Meeting, March 29-30, 2011, Portland, Ore.
Megler, V. M., Maier, David: Needles in Haystacks: Finding Observational Data with Geospatial and Temporal Characteristics. American Association of Geographers Space-Time Symposium. April 13-15, 2011, Seattle, Washington
Megler, V. M., D. Maier (2011) Needles in Haystacks: Finding Observational Data with Geospatial and Temporal Characteristics. GIS In Action, March 29-30, 2011, Portland, Ore.
Needoba, J. (2011) Implementation of a Columbia River coastal observatory for ecosystem research and monitoring. 7th Annual Heceta Head Costal Conference, Oct. 28-29, 2011, Florence, Ore.
Needoba, J. (2011) New Insights on the Biogeochemistry of the Columbia River from In Situ Sensors. USGS Portland Seminar Series. Nov. 29, 2011 Portland, Ore.
Plant, W.J. (2011) Observations with Low-Grazing-Angle Coherent Radars on Rivers and Oceans, Sensing the Ocean with Marine Radars. First Workshop on Sensing the Ocean with Marine Radar, May 4, 2011, Lerici, Italy
Ribalet, F. (2011) Importance of marine ecotone in biogeochemical cycles. Chemical Oceanography Lunch Seminar, May 13 2011, Seattle WA.
Schwarsztein, J., Ribalet, F., Armbrust, E.V. (2011) Using novel flow cytometry technology to analyze microscopic algae populations in the North Pacific. Annual UW Undergraduate Research Symposium, May 20, 2011, Seattle WA,
Simon, H.M., M. Smith, L. Herfort, V. Campbell, K. Tyrol, L. Zeigler, A. Allen, D. Suciu (2011) Archaea in the Columbia River Coastal Margin. Gordon Research Conferences - Archaea: Ecology, Metabolism & Molecular Biology. August 1, 2011, Waterville Valley, NH
Spitz, Y.H. (2011) Oregon Coast Ecosystem - Review of important findings and modeling activities. Seminar, February 4, 2011, Institut de Ciències del Mar – CSIC, Barcelona, Spain
Zhang, Y. (2011) Challenges in 3D cross-scale modeling, SIAM Conference on Mathematical & Computational Issues in the Geosciences. Long Beach, CA.
Zhang, Y. (2011) New Development of SELFE Modeling System and Applications to Inundation Studies. Estuarine and Coastal Modeling Conference, Nov. 2012, St. Augustine, FL.
Anderson, C.R., R. Davis, S. Bandolin, A. M. Baptista, B.M. Tebo (2010) Proteomic and genetic evidence for in situ bacterial Mn-oxidation in the Columbia River Estuary and coastal plume. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Bandolin, N. (2010) Towards Long-Term Time Series of Sediment Concentrations in the Columbia Rive Estuary. Pacific Univeristy Student Poster Sessions, November 16, Forest Grove, Ore.
Baptista, A. M. (2010). Virtual Columbia River. Eastern Pacific Ocean Prediction Forum, September 20-22, Portland, Ore.
Baptista, A. M., C. Seaton, J. Needoba, M. Wilkin, K.Rathmell, P. Turner, S. Riseman, C. Roegner (2010). The Columbia River estuary as an ocean sentinel: temperature, hypoxia and other tales. EPOC 2010, September 22-25, Mt. Hood, Ore.
Baptista, A. M., E. V. Armbrust, B. C. Crump, L. Herfort; B. M. Howe, M. D. Levine, D. Maier, C. L. McNeil, J. Needoba, T. D. Peterson, F. G. Prahl, T. B. Sanford, H. M. Simon, M. Smit, Y. H. Spitz, B. M. Tebo, P. Zuber (2010). Coastal margin collaboratories: from reactive to anticipatory science (Invited). AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Baptista, A. M. (2010). Coastal Margin Science in the Era of Collaboratories. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Baptista, A. M. (2010). An Advanced Observation and Prediction System for the Columbia River. 2010 Coastal Summit, May 21, Long Beach, Wa.
Breitburg, D. L., B. C. Crump, J. O. Dabiri, C. Gallegos. (2010). Ecosystem engineers in the plankton: Habitat alteration by species ranging from microbes to jellyfish. Society for Integrative and Comparative Biology annual meeting, January 3-10, Seattle, WA.
Bräuer S.L, Anitori, RP, Davis R, Carmichael MJ, Smythe W, Tebo, BM (2010). A peptide-based probe for the capture of manganese oxides and associated microorganisms. The 13th International Symposium on Microbial Ecology, August 22-27, Seattle, WA.
Cho, K., A. M. Baptista, Y. J. Zhang, C. L. McNeil, M. P. Wilkin, K. Rathmel, M. Kosro, Y. H. Spitz, B. C. Crump, M. D. Levine, S. D. Pierce, T. D. Peterson, C. Wingard (2010). Sub-tidal circulation in the Columbia River estuary-plume-shelf system in spring and summer 2009. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Crump, B. C. (2010). Can temporal patterns in planktonic microbial communities serve as indicators of ecosystem change? Department of Ecology and Evolution, Uppsala University, October 6, Uppsala, Sweden
Crump, B. C. (2010). Can temporal patterns in planktonic microbial communities serve as indicators of ecosystem change? Cary Institute for Ecosystem Studies, September 23, Millbrook, New York,
Crump, B. C., C. S. Fortunato, H. E. Adams, and G. W. Kling. (2010). Can temporal patterns in planktonic microbial communities serve as indicators of ecosystem change? 13th International Symposium on Microbial Ecology, August 22-27, Seattle, WA
Dang, T.X., S. Frolov, A. M. Baptista (2010). CoTrack: A Framework for Tracking Dynamic Features with Static and Mobile Underwater Sensors. AGU Ocean Sciences Meeting, February 21-26, Portland, OR.
DeLorenzo, S., B. Tebo, S. Bräuer, L. Herfort, J. Needoba, P. Zuber (2010). Active heterotrophic bacterial assemblages involved in inorganic carbon fixation in the Pacific Northwest coastal margin. AGU Ocean Sciences Meeting, February 21-26, Portland, OR.
DeLorenzo, S. (2010) Enhanced anaplerotic carbon fixation in hypoxic waters. Pacific Univeristy Student Poster Sessions, November 16, Forest Grove, OR.
DeLorenzo, S., B.M. Tebo, S.L. Brauer, L. Herfort, J.A. Needoba, P. Zuber (2010). The role of anaplerotic carbon fixation in heterotrophic bacteria as a survival mechanism in hypoxic waters. The 13th International Symposium on Microbial Ecology, August 22-27, Seattle, WA.
Durski, S.M., Y. H. Spitz, A. M. Baptista, J. Cho, L. Herfort, T. D. Peterson, Y. J. Zhang (2010). Dynamics of Myrionecta Rubra blooms in the Columbia River estuary. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Durski, S.M., Y.H. Spitz, A.M. Baptista and J. Cho. (2010) Active particle-based modeling of blooms of a mixotrophic ciliate in the lower Columbia River Estuary. IMUM2010 workshop, August 17–20, Cambridge, MA.
Fortunato, C. S. , B. C. Crump. (2010). Spatial and temporal variability of bacterioplankton communities across a river to ocean gradient assessed with tag pyrosequencing. 13th International Symposium on Microbial Ecology, August 22-27, Seattle, WA
Gilbert, M., J. A. Needoba (2010). Nutrient Mapping of Surface Waters in Oregon/Washington Coastal Waters Using a 5-channel In Situ Nutrient Analyzer. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Goldman, J., S. Rounds, J. Needoba (2010) Effects of fluorescence quenching by iron and zinc on the colored dissolved organic matter in urban rivers. American Chemical Society Annual Meeting, March 21, San Francisco, CA.
Green, V., M. Kadake, W. Smythe, J. Taylor (2010) Understanding microbial dynamics in coastal ecosystems: 3 stories from the Pacific Northwest. American Indian Science and Engineering Society national conference, November, 2010, Albuquerque, New Mexico
Green, V., M. Richardson, C. Steppick (2010) Innovative Integrative Approaches to K-Gray Ocean Science Education and Diversity. American Geophysical Union Ocean Sciences Meeting, February 2010, Portland, Ore.
Hager, K.R., L.N. Farrel, M.E. Olszko, S.M. McAllister, R.E. Davis, W.F. Smythe, B.M. Tebo, S.L. Cady, and C.L. Moyer. (2010) Variability In Microbial Community Structure Along a Geographically Distributed Thermal Gradient At Queen’s Laundry, Yellowstone Hot Springs. ISME, Seattle WA.
Haynes, V., A.i Ghindilis, M. Smit, H. Simon (2010) Impedance Sensor Arrays for Development of a Real Time and Label Free Bio-Affinity Assa. Pacific Univeristy Student Poster Sessions, November 16, Forest Grove, Ore.
Herfort, L., T. D. Peterson, R. Warnick, L. McCue, B. C. Crump, F. G. Prahl, A. M. Baptista, V. Campbell; M. Selby, G. C. Roegner, P. Zuber (2010). Impact of a Myrionecta rubra red tide on the Columbia River estuary. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Jones, M., J.Peele, M. Patterson, K. Kadake, S. Faucett, A. Christenson, K. DelGuzman, N. Nix, T. Dilts, T. Morrison, C. Cline, L. Kosta, M.e Kadake, M. Nix, D. Edenshaw, J. Guthrie, W. Carle, A. Kashevarof, T.l Edenshaw, A. Dilts, K. Frank, T. Young, M. Richardson, S. Walsh, B. Young, R. Hugo, W. F. Smythe, A. Baptista, S. Cady (2010). “Bioassessment Of Rivers: Are They Healthy?”. AISES, Albuquerque, New Mexico.
Kadake, M. J., W. F. Smythe, B. M. Tebo .(2010) “Investigations Of A Natural Cold Iron-Manganese-Carbonate Depositing System” AISES, Albuquerque, New Mexico.
Kahn, P., L. Herfort, T. D. Peterson, L. McCue, P. Zuber (2010). A Comparison of Eukaryotic Diversity along a River-to-Ocean Gradient using Molecular and Traditional Tools. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Kahn, P., L. Herfort, T. D. Peterson, M. Geniza, P. Zuber (2010) Estuarine ‘Blooms’ of a Heterotrophic Flagellate and the Fate of the River’s Spring Primary Production. International Society of Microbial Ecology, August 22-27, Seattle, WA.
Kahn, P. (2010) Seasonal Variations and Diversity of Eukaryotic Microbial Assemblages across a River-to-Ocean Gradient using Molecular and Traditional Tools. Pacific University Research Symposium, November 16, Forest Grove, Ore.
Kosro, M. (2010). Surface current mapping with HF on West Coast. Eastern Pacific Ocean Prediction Forum, September 20-22, Portland, Ore.
Kudela, R.M., Peterson, T.D., and Blakely, M.D. (2010). (Invited) Reconciling Phytoplankton Growth Rates and Standing Stocks in the northern Gulf of Alaska: Evidence for a Physical-Biological Mosaic. AGU Fall Meeting, December 13-17, San Francisco, CA
Lauffenburger, N.E., T. B. Sanford (2010). Remote Sensing of Salinity Intrusions in a Marine Estuary. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Law. G., A. M. Baptista (2010) The Virtual Estuary: From Modeling to Climatologies. November 16, Forest Grove, Ore.
Law, C. G., A. M. Baptista, C. Seaton, S. Frolov, Y. J. Zhang, K. Cho, Y. H. Spitz, S. M. Durski, N. Hyde (2010). Data-informed circulation simulations in the river-to-shelf Columbia River system. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Levine, M. D., S. D. Pierce, L. F. Kilcher, M. Kosro, A. M. Baptista, B. C. Crump (2010). Challenges in Tracking Dye in the Columbia River Plume. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Maier, M., J. A. Needoba, T. D. Peterson (2010). Spatial and temporal distribution of chytrid fungus infections of diatoms in the Columbia River and estuary. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
McNeil, C. L., A. Shcherbina, T. Litchendorf, T. Swanson, A. Baptista, K. Cho, M. D. Levine, C. Wingard (2010). Observations of internal waves, mixing, and plume dynamics in the vicinity of the Columbia River using AUVs and shipboard echosounder. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
McKibben, S.M., P.G. Strutton, A.M. Wood, G. Miller, B.T. Eberhart, V. Trainer (2010) Predictive Model for Domoic Acid off the Oregon Coast. AGU Ocean Sciences Meeting, February 2010.
McKibben, S.M., P.G. Strutton, A.M. Wood, G. Miller, B.T. Eberhart, V. Trainer (2010) Predictive models for domoic acid and Pseudo-nitzschia blooms off the Oregon coast. NOAA NWFSC, Seattle, WA
Moeller, F. U., . M. Simon, J. Needoba (2010). Variability of ammonia-oxidizing bacteria and archaea in the lower Columbia River Estuary. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Palacios, S.L., T.D Peterson, G.J.Smith, R.M. Kudela (2010). Optical discrimination of bloom forming phytoplankton using an in-situ ultraviolet light sensor, AGU Ocean Sciences Meeting, Portland, Ore.
Patterson, M., K. Kadake, M. Jones, S. Faucett, A. Christenson, K. DelGuzman, N. Nix, T. Dilts, T. Morrison, C. Cline, T. Young, M. Richardson, M. Betcher, S. Walsh, B. Young, R. Hugo, W. F. Smythe, M. Haygood, A. Baptista, S. Cady .(2010) Variables Affecting Shipworm Colonization. AISES, Albuquerque, New Mexico.
Peterson, T., M. W. Smit, M. Maier; H. M. Simon (2010). Rapid detection of Pseudo-nitzschia phylotypes using DNA microarrays. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Prah, F. G., T. D. Peterson, J. A. Needoba, R. Collier; B. R. Hales (2010). Gaining Perspective on Methane Dynamics in Waters of the Lower Columbia River and its Estuary. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Roegner, G.C., Needoba, J.A., Baptista, A.M. (2010) “Coastal upwelling supplies oxygen-depleted water to the Columbia River estuary.” 57th annual Eastern Pacific Ocean Conference (EPOC 2010), September 22-25, Mt. Hood, Ore.
Seaton C., A. M. Baptista, P. Turner, A. Jaramillo, D. Hansen, D. Maier, E. Van Matre, A. Johnson, J. Oltmann (2010) Lessons learned from the cyber infrastructure of the SATURN coastal margin “collaboratory” (Invited), Eos Trans. AGU, 91(26), Ocean Sci. Meet. Suppl., Abstract IT21C-03
Simon, H.M., A. Baptista, M. W. Smit (2010). Impedimetric Label-Free Sensing of DNA Hybridization in Real Time for Rapid, PCR-Based Detection of Microorganisms in the Environment. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Smit, M. (2010) Impedimetric Platform for Pathogen Detection. Next Generation Diagnostics. August 24-26, Washington, DC.
Smit, M. (2010) Microarray Analysis of Bacterial and Archaeal Gene Expression Associated in the Columbia River Coastal Margin. American Society for Microbiology, May 2010, San Diego, CA.
Smit, M. (2010) Microarray Analysis of Microbial Gene Expression Associated with Nitrogen Cycling in the Columbia River Coastal Margin. The 13th International Society for Microbial Ecology Conference, Seattle, WA.
Smit, M.W., Saadoun, B. and Simon, H.M. (2010) Microarray Analysis of Microbial Gene Expression Associated With Nitrogen Cycling in the Columbia River Coastal Margin. ISME Conference, August 22-27, Seattle, WA,
Smythe, W. F., R. E. Davis, B. M. Tebo . (2010) “Environmental Biogenic Manganese Oxidation: Examination Of A Hot Spring” AISES, Albuquerque, New Mexico.
Smythe, W. F., A. Dohnalkova, B. M. Tebo. (2010). “Manganese Oxides and Associated Manganese Oxidizing Bacteria”. ISME, Seattle WA.
Smythe, W. F., R. Hugo, S. Walsh, B. Young, M. Betcher, M. Haygood, S. L. Cady. (2010). “Geoscience Education Research: Engaging Native Alaskan Students And Their Community”. SACNAS, Anaheim, CA.
Smythe W., A. Dohnalkova, and B. Tebo (2010). Manganese oxides associated manganese oxidizing bacteria. The 13th International Symposium on Microbial Ecology, Seattle, WA.
Spitz, Y. (2011). Ecosystem Modeling of the Oregon Shelf: Everything but the Kitchen Sink, International Symposium on Modeling and Analysis of Marine Environmental Problems (MAMEP2010), Ehime University, Matsuyama, Japan, September 22-23. Invited keynote speaker
Thanh D., N. Bulusu, W. Feng, S. Frolov, A. Baptista (2010). CoTrack: A Framework for Tracking Dynamic Features with Static and Mobile Sensors, INFOCOM, 2010 Proceedings IEEE
Wegner, K.E., S. Kelley, E. A. Woody, J. J. Cresswell, A. M. Baptista (2010). Attracting Underrepresented Students to Coastal Margin and Ocean Science: A Multi-offering Partnership Approach. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Wood, A.M., P.G. Strutton, B. Eberhart, D.G. Foley, Z. Forster, M. Hunter, S.M.McKibben, G. Miller, L. O’Higgins, W.T. Peterson, T.D., Peterson, V.L.Trainer, D. Smith, J.F.Tweddle, A.E. White (2010). MOCHA: Monitoring Oregon Coastal Harmful Algae, AGU Ocean Sciences Meeting, Portland, Ore.
Xu, M., Nurmi, J., Trantnyek, P. and Simon, H.M. (2010). Elucidating Niche Diversification In Ammonia Oxidizing Archaea and Bacteria in Columbia River Freshwater Sediments. ISME Conference, August 22-27, Seattle, WA.
Zhang, Y.J., A. M. Baptista, C. L. McNeil, W. J. Plant, G. Farquharson (2010). Internal waves in Columbia River estuary. AGU Ocean Sciences Meeting, February 21-26, Portland, Ore.
Y.J. Zhang, A.M. Baptista, A. Azevedo, A. de Oliveira, A.B. Fortunato, A. Roland (2010). SELFE Cross-Scale Modeling System: new developments and applications. International workshop on Multiscale (Un)-structured mesh numerical ocean Modeling (IMUM 2010), Cambridge, MA, 17-20 August 2010.
Anderson, C., R. Davis, S. Bandolin, A. M. Baptista and B. M. Tebo (2009). Analysis of in situ Mn(II)-oxidation in the Columbia River and offshore plume: Linking microbial community structure to active biogeochemical cycles. 19th International Symposium on Environmental Biogeochemistry, Hamburg, Germany.
Anthony, S. and F. G. Prahl (2009). Seasonal Variation in Willamette River Dissolved Methane Concentrations. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Bandolin, N., M. Wilkin, K. J. Rathmell and A. M. Baptista (2009). Towards long-term time series of sediment concentrations in the Columbia River. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Barnard, A. H., C. M. Orrico, J. Needoba, S. McLean and M. Lewis (2009). Contrasting the Temporal Scales of Variability in Particulate and Dissolved Materials in Four Estuarine/Coastal Systems. Coastal and Estuarine Research Federation 20th Bienniel Conference, Portland, OR.
Bebis, G., R. D. Boyle, B. Parvin, D. Koracin, Y. Kuno, J. Wang, R. Pajarola, P. Lindstrom, A. Hinkenjann, M. L. Encarnação, C. T. Silva, D.l S. Coming (2009). Advances in Visual Computing. 5th International Symposium, ISVC 2009, Las Vegas, NV, November 30 - December 2, 2009, Proceedings, Part II ISVC 2009
Cramer, A., M. Xu, J. Nurmi, P. Tratnyek and H. Simon (2009). Correlating Geochemical Variables with Crenarchaeal Populations and Activities in Columbia River Sediment. Coastal and Estuarine Research Federation 20th Bienniel Conference, Portland, OR.
Crump, B. C. 2009. Microbial biogeography and ecosystem functions in lakes, rivers, estuaries and oceans. University of Maryland Center for Environmental Science Horn Point Laboratory. January 21, 2009.
Crump, B. C., J. L. Bowen and J. K. Apple (2009). An overview of microbial communities across estuarine and coastal environmental gradients. Coastal and Estuarine Research Federation 20th Bienniel Conference, Portland, OR.
Crump, B. C., C. S. Fortunato, M. W. Smit, H. M. Simon, L. Herfort, Y. J. Zhang, C. G. Law, A. M. Baptista and P. Zuber (2009). Drifter studies: Diel patterns in bacterioplankton community composition and gene expression in the Columbia River plume and coastal ocean. Coastal and Estuarine Research Federation 20th Bienniel Conference, Portland, OR.
Crump, B. C., B. J. Peterson, P. A. Raymond, R. M. W. Amon, A. Rinehart, J. W. McClelland, R. M. Holmes. (2009). Circumpolar Synchrony in Big River Bacterioplankton. American Society of Limnology and Oceanography Aquatic Sciences Meeting, Nice, France, January 25-30, 2009.
DeLorenzo, S., B. M. Tebo, S. L. Brauer, L. Herfort, J. Needoba and P. Zuber (2009). Seasonal Shifts in Active Microbial Assemblages Involved in Inorganic Carbon Fixation in the Pacific Northwest Coastal Margin. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Etiene T., C. Scheidegger, L. G. Nonato, R. M. Kirby, and C. Silva. (2009). Verifiable Visualization for Isosurface Extraction. IEEE Transactions on Visualization and Computer Graphics.
Fortunato, C. S. and B. C. Crump (2009). Spatial and temporal variability of microbial communities in the Columbia River, its estuary, and the adjacent coastal ocean assessed with tag pyrosequencing. Coastal and Estuarine Research Federation 20th Bienniel Conference, Portland, OR.
Goldman, J., K. Butler, S. Rounds, T. D. Peterson and J. Needoba (2009). Applications of Fluorescence Spectroscopy for Monitoring Water Quality in an Urban Watershed. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Green, V. L. and A. M. Baptista (2009). Research Undergraduate Experiences in Coastal Margins: An experiment in bi-directional mentoring. Coastal and Estuarine Research Federation 20th Bienniel Conference, Portland, OR.
Green, V., J. Maybee, R. Warnick (2009).Understanding Microbial Dynamics in Aquatic Environments, American Indian Science and Engineering Society, October 2009, Portland, OR.
Green, V, (2009)The Center for Coastal Margin Observation and Prediction: Building Partnerships and Sharing Resources to Promote Diversity. NSF Human Resource Development (HRD) Joint Annual Meeting, June 2009, Washington, D.C.
Hansen, D. M., C. M. Seaton, A. V. Jaramillo, P. J. Turner, J. Schilling, D. Maier, J. Freire, C. T. Silva and A. Baptista (2009). From Observatories to Collaboratories: The SATURN Cyber-Infrastructure. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Herfort, L., L. McCue, M. Selby, V. Campbell, B. C. Crump, T. D. Peterson and P. Zuber (2009). Impact of and Estuarine Turbidity Maxima on Microbial Assemblages in the Columbia River Estuary. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Hyde, N., P. J. Turner, C. G. Law, Y. J. Zhang and A. M. Baptista (2009). A Virtual Estuary: Columbia River climatology and anomalies. Coastal and Estuarine Research Federation 20th Bienniel Conference, Portland, OR.
Kahn, P., L. Herfort, P. Zuber and T. D. Peterson (2009). Diversity of eukaryotic microbial assemblages across a river-to-ocean gradient using molecular and traditional tools. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Law, C. G. and A. M. Baptista (2009). A Virtual Estuary: Columbia River estuary and plume response to large-scale environmental change. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Levine, M., B. C. Crump, J. L. Green, C. Gurbisz, D. Stotts and J. Laskowski (2009). Learning Science through Research: Meaningful watershed experiences based on current scientific research. NOAA's Bay Watershed Education and Training (B-WET) Program 2009 Conference, Silver Spring, MD.
Needoba, J. (2009). Quantifying coastal nitrate flux and net ecosystem metabolism using in situ chemical sensors. Gordon Research Conference on Chemical Oceanography, Tilton School, NH.
Nurmi, J. T., S. Feng, P. G. Tratnyek, S. Chinni and B. M. Tebo (2009). Process and analytical chemistry of nano manganese oxide electrodes. 237th ACS National Meeting, Salt Lake City, UT.
Orrico, C., McLean, S., Barnard, A., Lewis, M., Moore, M., (2009). Long-term monitoring of biological, physical and chemical properties in two estuaries using the LOBO mooring system. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Plant, J. N., J. A. Needoba, L. J. Coletti, H. W. Jannasch, T. R. Martz and K. S. Johnson (2009). Linking agriculture, nitrogen inputs and ecosystem metabolism in Elkhorn Slough on time scales from hours to years. Coastal and Estuarine Research Federation 20th Bienniel Conference, Portland, OR.
Prahl, F., T. Peterson and J. Needoba (2009). Human Impacts on Biogeochemical Processes along the Land-to-Sea Continuum. Coastal and Estuarine Research Federation 20th Biennial Conference.
Prahl, F. G., J. Needoba, T. D. Peterson and M. Wolhowe (2009). A tidal bellows for dissolved methane in the lower Columbia River and its estuary. Coastal and Estuarine Research Federation 20th Bienniel Conference, Portland, OR.
Risien, C., R. Blair, A. Jaramillo, D. Jones, P.M. Kosro, D. Martin, E. Mayoraga, J. Newton, T. Tanner, and S. Uczekaj, (2009). The NANOOS visualization system: aggregating, displaying and serving data. Oceans ’09, Biloxi MS, Oct 28, 2009.
Rivas, D., E. Garcia-Mendoza, and A. Almazan-Becerril (2009). Lagrangian circulation in Todos Santos Bay during spring 2007. Antoine Badan Memorial Symposium "The Ocean, the Wine and the Valley", 16-18 Nov, 2009. Ensenada, B.C., Mexico.
Rivas, D. (2009). A numerical modeling study of the upwelling source waters along the Oregon coast during 2005. Gordon Research Conference on Coastal Ocean Circulation, 7-12 June 2009, New London, NH.
Santos, E., L. Lins, J. Ahrens, J. Freire, and C. Silva (2009). VisMashup: Streamlining the Creation of Custom Visualization Applications. IEEE Transactions on Visualization and Computer Graphics.
Santos, E., J. Tierny, A. Khan, B. Grimm, L. Lins, J. Freire, V. Pascucci, C. Silva, S. Klasky, R. Barreto, N. Podhorszki (2009). Enabling Advanced Visualization Tools in a Simulation Monitoring System. IEEE International Conference on e-Science 2009.
Santos, E., D. Koop, H. Vo, E. Anderson, J. Freire, and C. Silva (2009). Workflow Medleys: A New Approach to Construct Mashups. Statistical and Scientific Database Management (SSDBM), 2009.
Seaton, C. M., M. Wilkin, K. J. Rathmell, N. Hyde, Y. J. Zhang, T. D. Peterson, F. G. Prahl, J. A. Needoba and A. M. Baptista (2009). Salinity Intrusion in Estuaries: Lessons learned from a vertical profiler. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Smith, M. W., L. Herfort, V. Campbell, K. Tyrol, B. C. Crump, P. Zuber and H. M. Simon (2009). Microarray Analysis of Microbial Gene Expression in Columbia River Estuary, Plume and Coastal Ocean. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Wegner, K. E., E. A. Woody, J. J. Cresswell, E. Davis-Lowe, T. D. Peterson and A. M. Baptista (2009). Experiments in K-12 Education on Coastal Margins. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Wilkin, M., K. J. Rathmell, C. M. Seaton, P. J. Turner, J. A. Needoba, T. D. Peterson and A. M. Baptista (2009). Towards long-term time series of biogeochemical vertical profiles in the Columbia River estuary. Coastal and Estuarine Research Federation 20th Biennial Conference, Portland, OR.
Xu, M., J. Nurmi, P. Tratnyek and H. Simon (2009). Combined Geochemical and Molecular Analyses of Archaeal and Bacterial Ammonia Oxidizers in Columbia River Sediments. International Conference on Nitrification, Louisville, KY, July 5-9, 2009.
Aguilar, C., B. Bruno, V. Green (2008) Ramping up for Success: Reflections on Developing Inter- and Intra-Institutional Partnerships from Three Science and Technology Centers. The American Geophysical Union, Ft. Lauderdale, Florida, May, 2008
Bandolin, N., A.M. Baptista (2008). The Current State of Coastal Observation Networks. SACNAS International Polar Year: Global Change in Our Communities, October 9-12, 2008, Salt Lake City, UT.
Christmas, A.F., T.D. Peterson. (2008). Determination of nanomolar concentrations of acetaminophen (paracetamol) in aqueous media by a simple colorimetric method using a liquid waveguide capillary cell coupled to a UV/Vis spectrophotometer, Annual Biomedical Research Conference for Minority Students, Orlando, FL, November 5-8.
Dalbotten, D., V. Green, R. Pandya, W. Uehara (2008) Geoscience Education and Native Americans: Changing the National Dialogue on Our Environment. The Society for Advancement of hicano and Native American Scientists, Salt Lake City, Utah, October, 2008
Freire, J., D. Koop, et al. (2008). International Provenance and Annotation Workshop (IPAW).
Freire, J., C. Silva (2008). Simplifying the Design of Workflows for Large-Scale Data Exploration and Visualization. Microsoft eScience Workshop.
Freire, J., C. Silva (2008). Towards Enabling Social Analysis of Scientific Data. CHI Social Data Analysis Workshop.
Freire, J., C. Silva (2008). VisTrails: Using Provenance to Streamline Data Exploration through Workflows. Keynote at the e-Science Workshop, Joao Pessoal, Brazil.
Fulton, D. P., A. L. Kurapov, et al. (2008). Effects of the Columbia River Plume on the Dynamics of Upwelling Off Oregon. 2008 Ocean Sciences Meeting, Orlando, FL.
Green, V., S. Brauer, L. Herfort, B. Howe, J. Zhang, A. Baptista (2008) Frontline Mentoring: Developing Effective Mentor Training for Post-Doctoral Fellows and Junior Faculty, The American Society of Limnology and Oceanography, Orlando, Florida, March, 2008
Green, V., B. Maracle, W. Smythe (2008) Understanding Watersheds, Coastal Margins and Hot Springs in the Pacific Northwest: Integrating Traditional Ecological Knowledge and Western Science. American Indian Society for Science and Engineering, Anaheim, CA, October, 2008
Herfort, L., M. Selby, et al. (2008). Microbial-Mediated Activities in River-to-Ocean Environments in the Pacific Northwest. American Society for Microbiology General Meeting, Boston, MA.
Howe, B., D. Maier, et al. (2008). Quarrying Dataspaces: Schemaless Profiling of Unfamiliar Dataspaces conjunction with ICDE 2008. Workshop on Information Integration Methods, Architectures, and Systems (IIMAS), Cancun, Mexico.
Kosro, P. M. (2008). Physical oceanographic scales presentation. Oregon Policy Advisory Council Science & Technology Subcommittee Workshop on Size & Spacing Guidelines for Marine Reserves in Oregon's Territorial Sea, Oregon Institute of Marine Biology.
Murphy, D., L. Herfort, et al. (2008). Biogeography of the Dominant Bacterial Taxa Across a Salinity Gradient In the Columbia River Estuary 1. American Society for Microbiology General Meeting, Boston, MA.
Needoba, J., J. Schoen (2008). Evaluation of Fluorescent Whitening Agents as Indicators of Anthropogenic Wastewater Discharges in the Columbia River, USA. AGU Chapman Conference, Birmingham, UK.
Needoba, J. A., A. M. Baptista, et al. (2008). Towards an in Situ Biogeochemical Observation Network for the Columbia River Estuary. Columbia River Estuary Conference on Ecosystem Restoration, Astoria, Oregon.
Nurmi, J. T., P.G. Tratnyek, et al. (2008). Hydrogen Peroxide and pH Sensor for use in a Fresh Water to Ocean System: Nano Biogenic MnO2 Microelectrode. 213th Electrochemical Society National Meeting, Phoenix, Arizona; Abs. # 1246.
Peterson, T. D., R. M. Kudela, et al. (2008). Influence of a recirculating river plume bulge on biogeochemical processes along the Oregon/Washington shelf. AGU Ocean Sciences, Orlando, Florida.
Rivas, D. (2008). A numerical modeling study of the upwelling source waters along the Oregon coast during 2005. AGU Fall Meeting 2008, San Francisco, CA.
Simon, H. M., J. T. Nurmi, et al. (2008). Combined Geochemical and Molecular Analyses of Crenarchaeal Assemblages in Columbia River Sediments. ASM, Boston, MA.
Strub, P. T., M. Saraceno, et al. (2008). Altimeter uses in coastal regions: two approaches. 2008 Ocean Sciences Meeting.
Wagner, J., T.D. Peterson, et al. (2008). Influence of changes in salinity on carbon release by phytoplankton, Apprenticeships in Science and Engineering Symposium, University of Portland.
Zhang, Y., A. Baptista, et al. (2008). A 3D hydrostatic model for coastal and oceanic applications. Seventh International Workshop on Unstructured Grid Numerical Modeling of Coastal, Shelf and Ocean Flows, Bedford Institute of Oceanography.
Zhang, Y., A. Baptista, et al. (2008). Tsunami inundation study with unstructured grids: benchmarking and application to the Cascadia Subduction Zone. Ocean Science 2008, Orlando, Florida.
Anderson, E., S. Callahan, et al. (2007). Hardware-Assisted Point-Based Volume Rendering of Tetrahedral Meshes. SIBGRAPI 2007 - Brazilian Symposium on Computer Graphics and Image Processing.
Anderson, E. W., S. P. Callahan, et al. (2007). VisTrails: Using Provenance to Streamline Data Exploration. Post Proceedings of the International Workshop on Data Integration in the Life Sciences (DILS) 2007.
Freire, J., C. Silva (2007). Provenance Management: Challenges and Opportunities. Invited tutorial at SBBD 2007 - Simposio Brasileiro de Banco de Dados, Joao Pessoal, Brazil.
Frolov, S., A. M. Baptista, et al. (2007). Data Assimilation with a Reduced-Dimensionality Model in a Coastal Observatory. Workshop on Data Assimilation in Support of Coastal Ocean Observing Systems, Corvallis, OR.
Green, V. Broadening Participation for Native Students. Affiliated Tribes of Northwest Indians, Olympia, Washington, April, 2007
Howe, B., N. Hagerty, et al. (2007). The Ocean Appliance: Complete Platform Provisioning for Low-Cost Data Sharing. IEEE/MTS Oceans 2007, Vancouver, BC.
Howe, B., D. Maier, et al. (2007). Smoothing the ROI Curve for Scientific Data Management Applications. Third Biennial Conference on Innovative Data Systems Research (CIDR 2007), Asilomar, CA.
Limm, P., J. T. Nurmi, et al. (2007). Design, Fabrication, and Application of a Novel Nitrate/Nitrite Electrochemical Sensor. ASE Conference, Portland State University, Portland, Oregon.
Myers, E, Zhang A, Aikman F, Zhang Y, Baptista A, Turner P, Seaton C. 2007. Evaluation and Transition of a Columbia River Nowcast/Forecast Circulation Model to NOAA’s National Ocean Service. Coastal Zone ‘07
Petes, L. (2007). Effects of environmental stress on reproductive physiology of intertidal mussels. PISCO All-Hands meeting, Corvallis, Oregon, Florida State University and Oregon State University.
Zhang, Y. L., A. M. Baptista (2007). A 3D unstructured grid hydrostatic model for scales from O(10km) to O(1m) (poster). Grodon Research Conference, New London, NH.
Zhang, Y. L., A. M. Baptista (2007). Towards a 3D higher-order estuarine and coastal model based on unstructured grids. Estuarine and Coastal Modeling, Newport, RI.
Zhang, Y, Baptista A, Wang K, Goldfinger C, Witter RC, Priest GR, Peterson C, Cruikshank K. 2007. Hydrodynamic simulations of historic tsunamis from the Cascadia Subduction Zone. Coastal Zone ’07.
Baptista, A.M. (2006). "CORIE: the first decade of a coastal-margin collaborative observatory," Oceans'06, MTS/ IEEE, Boston, MA
Bulusu, N., “Wireless Sensor Networks and Their Real World Applications”, Grace Hopper Conference, San Diego, October 2006.
Baptista, A.M. "CORIE: the first decade of a coastal margin collaborative observatory", MTS-IEEE Oceans'06, Boston, MA, September 18-21 2006.
Baptista, A.M. “The Columbia River observing system and a vision for future integrated systems”, 53rd annual Eastern Pacific Ocean Conference, EPOC'06, Timberline Lodge, OR, September 27-30.
Baptista, A.M., J.Y. Zhang, P.J. Turner, M. Wilkin, C. Seaton, E. vanMatre. "Scaling up a coastal margin observing system", 7th International Conference on HydroScience and Engineering, Philadelphia, PA, September 10-13 2006.
Baptista, A.M. "Oregon and ocean observing: vision, status and unique opportunities", presentation to the Natural Resources Cabinet of the Governor of Oregon, Salem, OR, August 2006. [back to top]
